PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05338.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 195aa    MW: 22013.9 Da    PI: 4.3814
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05338.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.75.6e-266106298
                   DUF260   2 CaaCkvlrr.kCa..kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilkl 83 
                              Ca+Ck+     C+  ++C++apyfp+++p kf  v+k+FG  nv k+l++l ++ +re a+++l+yeAear++dP+ G vgv l l
  Rsa1.0_05338.1_g00001.1   6 CAVCKFAVVgPCTlgNECIMAPYFPSTEPDKFDRVNKVFGILNVYKILRNLeEPWQREYAANALCYEAEARIQDPICGYVGVQLVL 91 
                              ******98768985578**********************************55667****************************** PP

                   DUF260  84 qqqleqlkaelallk 98 
                              +++l++lk +++++ 
  Rsa1.0_05338.1_g00001.1  92 ENKLNNLKRDIDSAL 106
                              ********9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.3E-246104IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089118.0987109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLPICAVCK FAVVGPCTLG NECIMAPYFP STEPDKFDRV NKVFGILNVY KILRNLEEPW  60
QREYAANALC YEAEARIQDP ICGYVGVQLV LENKLNNLKR DIDSALNELM ITKDKVPQYF  120
NLPIPSDFAE PSLFSLINEM LELNEDQKNQ RTRLPDVDAQ RNVDEIVGMR ENDQGDVHRA  180
DGASTSSGPP HQNQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595095.11e-95PREDICTED: LOB domain-containing protein 32-like
TrEMBLA0A0D3DFG32e-98A0A0D3DFG3_BRAOL; Uncharacterized protein
STRINGBra019364.1-P4e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.11e-42LOB domain-containing protein 35